Haiminen, Niina : rechercher sur Z-Library

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1

Algorithms for unimodal segmentation with applications to unimodality detection

Niina Haiminen, Aristides Gionis, Kari Laasonen

Journal:

Knowledge and Information Systems

Année:

2008

Langue:

english

Fichier:

PDF, 697 KB

english, 2008

2

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color

Motamayor, Juan C, Mockaitis, Keithanne, Schmutz, Jeremy, Haiminen, Niina, III, Donald, Cornejo, Omar, Findley, Seth D, Zheng, Ping, Utro, Filippo, Royaert, Stefan, Saski, Christopher, Jenkins, Jerry,

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 10.04 MB

english, 2013

3

Efficient in silico Chromosomal Representation of Populations via Indexing Ancestral Genomes

Haiminen, Niina, Utro, Filippo, Lebreton, Claude, Flament, Pascal, Karaman, Zivan, Parida, Laxmi

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 165 KB

english, 2013

4

Haplotype assembly of autotetraploid potato using integer linear programming

Siragusa, Enrico, Haiminen, Niina, Finkers, Richard, Visser, Richard, Parida, Laxmi, Birol, Inanc

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 434 KB

english, 2019

5

Haplotype assembly of autotetraploid potato using integer linear programing

Siragusa, Enrico, Haiminen, Niina, Finkers, Richard, Visser, Richard, Parida, Laxmi

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 74 KB

english, 2019

6

Haplotype assembly of autotetraploid potato using integer linear programing

Siragusa, Enrico, Haiminen, Niina, Finkers, Richard, Visser, Richard, Parida, Laxmi

Journal:

Année:

2019

Fichier:

PDF, 74 KB

2019

7

Randomization techniques for assessing the significance of gene periodicity results

Aleksi Kallio, Niko Vuokko, Markus Ojala, Niina Haiminen, Heikki Mannila

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 338 KB

english, 2011

8

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes

Niina Haiminen, F Alex Feltus, Laxmi Parida

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.86 MB

english, 2011

9

Sequencing of a QTL-rich region of theTheobroma cacaogenome using pooled BACs and the identification of trait specific candidate genes

Frank A Feltus, Christopher A Saski, Keithanne Mockaitis, Niina Haiminen, Laxmi Parida, Zachary Smith, James Ford, Margaret E Staton, Stephen P Ficklin, Barbara P Blackmon, Chun-Huai Cheng, Raymond J

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 572 KB

english, 2011

10

Randomization methods for assessing data analysis results on real-valued matrices

Markus Ojala, Niko Vuokko, Aleksi Kallio, Niina Haiminen, Heikki Mannila

Journal:

Statistical Analysis and Data Mining

Année:

2009

Langue:

english

Fichier:

PDF, 340 KB

english, 2009

11

Comparing segmentations by applying randomization techniques

Niina Haiminen, Heikki Mannila, Evimaria Terzi

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 297 KB

english, 2007

12

Determining significance of pairwise co-occurrences of events in bursty sequences

Niina Haiminen, Heikki Mannila, Evimaria Terzi

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 698 KB

english, 2008

13

Discovering isochores by least-squares optimal segmentation

Niina Haiminen, Heikki Mannila

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2007

14

Detecting novel genes with sparse arrays

Mikko Arvas, Niina Haiminen, Bart Smit, Jari Rautio, Marika Vitikainen, Marilyn Wiebe, Diego Martinez, Christine Chee, Joe Kunkel, Charles Sanchez, Mary Anne Nelson, Tiina Pakula, Markku Saloheimo, Me

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 764 KB

english, 2010

15

iXora: exact haplotype inferencing and trait association

Filippo Utro, Niina Haiminen, Donald Livingstone III, Omar E Cornejo…

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 843 KB

english, 2013

16

SimBA: simulation algorithm to fit extant-population distributions

Parida, Laxmi, Haiminen, Niina

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 1020 KB

english, 2015

17

Comparative exomics ofPhalariscultivars under salt stress

Haiminen, Niina, Klaas, Manfred, Zhou, Zeyu, Utro, Filippo, Cormican, Paul, Didion, Thomas, Jensen, Christian, Mason, Christopher E, Barth, Susanne, Parida, Laxmi

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 3.81 MB

english, 2014

18

Evaluation of BIC and Cross Validation for model selection on sequence segmentations

Haiminen, Niina, Mannila, Heikki

Journal:

International Journal of Data Mining and Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 556 KB

english, 2010

19

[ACM Press the 7th ACM International Conference - Seattle, WA, USA (2016.10.02-2016.10.05)] Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '16 - Scalable Algorithms at Genomic Resolution to fit LD Distributions

Parida, Laxmi, Haiminen, Niina

Année:

2016

Langue:

english

Fichier:

PDF, 333 KB

english, 2016

20

Linear time algorithms to construct populations fitting multiple constraint distributions at genomic scales

Siragusa, Enrico, Haiminen, Niina, Utro, Filippo, Parida, Laxmi

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 530 KB

english, 2017

21

Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results

Haiminen, Niina, Kuhn, David N., Parida, Laxmi, Rigoutsos, Isidore, Rzhetsky, Andrey

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 528 KB

english, 2011

22

Application of Genome Wide Association and Genomic Prediction for Improvement of Cacao Productivity and Resistance to Black and Frosty Pod Diseases

Romero Navarro, J. Alberto, Phillips-Mora, Wilbert, Arciniegas-Leal, Adriana, Mata-Quirós, Allan, Haiminen, Niina, Mustiga, Guiliana, Livingstone III, Donald, van Bakel, Harm, Kuhn, David N., Parida,

Journal:

Frontiers in Plant Science

Année:

2017

Langue:

english

Fichier:

PDF, 3.45 MB

english, 2017

23

Signal enrichment with strain-level resolution in metagenomes using topological data analysis

Guzmán-Sáenz, Aldo, Haiminen, Niina, Basu, Saugata, Parida, Laxmi

Journal:

Année:

2019

Fichier:

PDF, 1.65 MB

2019

24

Transcriptome characterization and differentially expressed genes under flooding and drought stress in the biomass grasses Phalaris arundinacea and Dactylis glomerata

Klaas, Manfred, Haiminen, Niina, Grant, Jim, Cormican, Paul, Finnan, John, Arojju, Sai Krishna, Utro, Filippo, Vellani, Tia, Parida, Laxmi, Barth, Susanne

Journal:

Annals of Botany

Année:

2019

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2019

25

Food authentication from shotgun sequencing reads with an application on high protein powders

Haiminen, Niina, Edlund, Stefan, Chambliss, David, Kunitomi, Mark, Weimer, Bart C., Ganesan, Balasubramanian, Baker, Robert, Markwell, Peter, Davis, Matthew, Huang, B. Carol, Kong, Nguyet, Prill, Robe

Journal:

npj Science of Food

Année:

2019

Fichier:

PDF, 975 KB

2019

26

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

Huang, Shi, Haiminen, Niina, Carrieri, Anna-Paola, Hu, Rebecca, Jiang, Lingjing, Parida, Laxmi, Russell, Baylee, Allaband, Celeste, Zarrinpar, Amir, VÃ¡zquez-Baeza, Yoshiki, Belda-Ferre, Pedro, Zhou,

Journal:

Année:

2020

Fichier:

PDF, 666 KB

2020

27

Hierarchically Labeled Database Indexing Allows Scalable Characterization of Microbiomes

Utro, Filippo, Haiminen, Niina, Siragusa, Enrico, Gardiner, Laura-Jayne, Seabolt, Ed, Krishna, Ritesh, Kaufman, James H., Parida, Laxmi

Journal:

Année:

2020

Fichier:

PDF, 4.05 MB

2020